Genome

java.lang.Object
- model.Genome

```
public class Genome
extends java.lang.Object
```
A genome holds a number of variables ("genes") that determine an animals characteristics. Note: this class has three constructors!

Field Summary

Fields
Modifier and Type	Field and Description
`private int`	`ageLimit`
`private static Genome`	`carnivoreGenome`
`private int`	`DEFAULT_MUTATION_RATE`
`private int`	`gestation`
`private static Genome`	`herbivoreGenome`
`private int`	`maturityAge`
`private int`	`metabolism`
`private int`	`mutationRate`
`private java.util.Random`	`random`
`private int`	`reproductionRate`
`private int`	`reproductiveEnergy`
`private int`	`sight`
`private int`	`speed`
`private int`	`stamina`
`private int`	`strength`

Constructor Summary

Constructors
Constructor and Description
`Genome()` The default constructor provides a standard genome.
`Genome(Genome parentGenome)` This constructor creates a new genome based on the parent genome passed to it, mutating it at random.
`Genome(java.util.HashMap<java.lang.String,java.lang.Integer> genVars)` This constructor creates a genome from a HashMap.
`Genome(int mutationRate, int speed, int stamina, int sight, int metabolism, int ageLimit, int strength, int reproductiveEnergy, int maturityAge, int gestation, int reproductionRate)` This constructor creates a genome from the values passed to it.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`java.util.HashMap<java.lang.String,java.lang.Integer>`	`asHashMap()` Return all the "genes" of this genome in a single HashMap.
`private void`	`checkGenome()` Check to make sure that no "gene" has a value below zero
`int`	`getAgeLimit()`
`int`	`getGestation()`
`int`	`getMaturityAge()`
`int`	`getMetabolism()`
`int`	`getMutationRate()`
`int`	`getReproductionRate()`
`int`	`getReproductiveEnergy()`
`int`	`getSight()`
`int`	`getSpeed()`
`int`	`getStamina()`
`int`	`getStrength()`
`private int`	`mutation(int coefficient)` Returns a mutation factor depending on the specified mutation rate.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mutationRate
```
private int mutationRate
```

speed
```
private int speed
```

stamina
```
private int stamina
```

sight
```
private int sight
```

metabolism
```
private int metabolism
```

ageLimit
```
private int ageLimit
```

strength
```
private int strength
```

reproductiveEnergy
```
private int reproductiveEnergy
```

maturityAge
```
private int maturityAge
```

gestation
```
private int gestation
```

reproductionRate
```
private int reproductionRate
```

DEFAULT_MUTATION_RATE
```
private final int DEFAULT_MUTATION_RATE
```
See Also:

Constant Field Values

herbivoreGenome
```
private static Genome herbivoreGenome
```

carnivoreGenome
```
private static Genome carnivoreGenome
```

random
```
private java.util.Random random
```

Constructor Detail

Genome
```
public Genome()
```
The default constructor provides a standard genome.

Genome
```
public Genome(Genome parentGenome)
```
This constructor creates a new genome based on the parent genome passed to it, mutating it at random.

Genome

public Genome(int mutationRate,
              int speed,
              int stamina,
              int sight,
              int metabolism,
              int ageLimit,
              int strength,
              int reproductiveEnergy,
              int maturityAge,
              int gestation,
              int reproductionRate)

This constructor creates a genome from the values passed to it.

Genome

public Genome(java.util.HashMap<java.lang.String,java.lang.Integer> genVars)

This constructor creates a genome from a HashMap.

Method Detail
- mutation
```
private int mutation(int coefficient)
```
  Returns a mutation factor depending on the specified mutation rate.
  
  Parameters:
  
  coefficient - Influences the size of the returned factor.
  
  Returns:
  
  factor The wanted mutation factor.
- checkGenome
```
private void checkGenome()
```
  Check to make sure that no "gene" has a value below zero
- asHashMap
```
public java.util.HashMap<java.lang.String,java.lang.Integer> asHashMap()
```
  Return all the "genes" of this genome in a single HashMap.
  
  Returns:
  
  genomeInfo
- getMutationRate
```
public int getMutationRate()
```
- getSpeed
```
public int getSpeed()
```
- getStamina
```
public int getStamina()
```
- getSight
```
public int getSight()
```
- getMetabolism
```
public int getMetabolism()
```
- getAgeLimit
```
public int getAgeLimit()
```
- getStrength
```
public int getStrength()
```
- getReproductiveEnergy
```
public int getReproductiveEnergy()
```
- getMaturityAge
```
public int getMaturityAge()
```
- getGestation
```
public int getGestation()
```
- getReproductionRate
```
public int getReproductionRate()
```

Class Genome

Field Summary

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Field Detail

mutationRate

speed

stamina

sight

metabolism

ageLimit

strength

reproductiveEnergy

maturityAge

gestation

reproductionRate

DEFAULT_MUTATION_RATE

herbivoreGenome

carnivoreGenome

random

Constructor Detail

Genome

Genome

Genome

Genome

Method Detail

mutation

checkGenome

asHashMap

getMutationRate

getSpeed

getStamina

getSight

getMetabolism

getAgeLimit

getStrength

getReproductiveEnergy

getMaturityAge

getGestation

getReproductionRate