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<h2 title="Class Genome" class="title">Class Genome</h2>
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<li>java.lang.Object</li>
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<li>model.Genome</li>
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<pre>public class <span class="typeNameLabel">Genome</span>
extends java.lang.Object</pre>
<div class="block">A genome holds a number of variables ("genes") that determine an animals characteristics.
Note: this class has three constructors!</div>
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<h3>Field Summary</h3>
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<caption><span>Fields</span><span class="tabEnd"> </span></caption>
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<th class="colFirst" scope="col">Modifier and Type</th>
<th class="colLast" scope="col">Field and Description</th>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#ageLimit">ageLimit</a></span></code> </td>
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<td class="colFirst"><code>private static <a href="../model/Genome.html" title="class in model">Genome</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#carnivoreGenome">carnivoreGenome</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#DEFAULT_MUTATION_RATE">DEFAULT_MUTATION_RATE</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#gestation">gestation</a></span></code> </td>
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<td class="colFirst"><code>private static <a href="../model/Genome.html" title="class in model">Genome</a></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#herbivoreGenome">herbivoreGenome</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#maturityAge">maturityAge</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#metabolism">metabolism</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#mutationRate">mutationRate</a></span></code> </td>
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<td class="colFirst"><code>private java.util.Random</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#random">random</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#reproductionRate">reproductionRate</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#reproductiveEnergy">reproductiveEnergy</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#sight">sight</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#speed">speed</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#stamina">stamina</a></span></code> </td>
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<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#strength">strength</a></span></code> </td>
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<th class="colOne" scope="col">Constructor and Description</th>
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<td class="colOne"><code><span class="memberNameLink"><a href="../model/Genome.html#Genome--">Genome</a></span>()</code>
<div class="block">The default constructor provides a standard genome.</div>
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<td class="colOne"><code><span class="memberNameLink"><a href="../model/Genome.html#Genome-model.Genome-">Genome</a></span>(<a href="../model/Genome.html" title="class in model">Genome</a> parentGenome)</code>
<div class="block">This constructor creates a new genome based on the parent genome passed
to it, mutating it at random.</div>
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<td class="colOne"><code><span class="memberNameLink"><a href="../model/Genome.html#Genome-java.util.HashMap-">Genome</a></span>(java.util.HashMap<java.lang.String,java.lang.Integer> genVars)</code>
<div class="block">This constructor creates a genome from a HashMap.</div>
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<td class="colOne"><code><span class="memberNameLink"><a href="../model/Genome.html#Genome-int-int-int-int-int-int-int-int-int-int-int-">Genome</a></span>(int mutationRate,
int speed,
int stamina,
int sight,
int metabolism,
int ageLimit,
int strength,
int reproductiveEnergy,
int maturityAge,
int gestation,
int reproductionRate)</code>
<div class="block">This constructor creates a genome from the values passed to it.</div>
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<h3>Method Summary</h3>
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<caption><span id="t0" class="activeTableTab"><span>All Methods</span><span class="tabEnd"> </span></span><span id="t2" class="tableTab"><span><a href="javascript:show(2);">Instance Methods</a></span><span class="tabEnd"> </span></span><span id="t4" class="tableTab"><span><a href="javascript:show(8);">Concrete Methods</a></span><span class="tabEnd"> </span></span></caption>
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<th class="colFirst" scope="col">Modifier and Type</th>
<th class="colLast" scope="col">Method and Description</th>
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<td class="colFirst"><code>java.util.HashMap<java.lang.String,java.lang.Integer></code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#asHashMap--">asHashMap</a></span>()</code>
<div class="block">Return all the "genes" of this genome in a single HashMap.</div>
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<td class="colFirst"><code>private void</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#checkGenome--">checkGenome</a></span>()</code>
<div class="block">Check to make sure that no "gene" has a value below zero</div>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getAgeLimit--">getAgeLimit</a></span>()</code> </td>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getGestation--">getGestation</a></span>()</code> </td>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getMaturityAge--">getMaturityAge</a></span>()</code> </td>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getMetabolism--">getMetabolism</a></span>()</code> </td>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getMutationRate--">getMutationRate</a></span>()</code> </td>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getReproductionRate--">getReproductionRate</a></span>()</code> </td>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getReproductiveEnergy--">getReproductiveEnergy</a></span>()</code> </td>
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<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getSight--">getSight</a></span>()</code> </td>
</tr>
<tr id="i10" class="altColor">
<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getSpeed--">getSpeed</a></span>()</code> </td>
</tr>
<tr id="i11" class="rowColor">
<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getStamina--">getStamina</a></span>()</code> </td>
</tr>
<tr id="i12" class="altColor">
<td class="colFirst"><code>int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#getStrength--">getStrength</a></span>()</code> </td>
</tr>
<tr id="i13" class="rowColor">
<td class="colFirst"><code>private int</code></td>
<td class="colLast"><code><span class="memberNameLink"><a href="../model/Genome.html#mutation-int-">mutation</a></span>(int coefficient)</code>
<div class="block">Returns a mutation factor depending on the specified mutation rate.</div>
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<h3>Methods inherited from class java.lang.Object</h3>
<code>clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait</code></li>
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<pre>private int mutationRate</pre>
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<pre>private int speed</pre>
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<pre>private int stamina</pre>
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<pre>private int sight</pre>
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<pre>private int metabolism</pre>
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<pre>private int ageLimit</pre>
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<pre>private int strength</pre>
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<pre>private int reproductiveEnergy</pre>
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<pre>private int maturityAge</pre>
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<pre>private int gestation</pre>
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<pre>private int reproductionRate</pre>
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<pre>private final int DEFAULT_MUTATION_RATE</pre>
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<dt><span class="seeLabel">See Also:</span></dt>
<dd><a href="../constant-values.html#model.Genome.DEFAULT_MUTATION_RATE">Constant Field Values</a></dd>
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<pre>private static <a href="../model/Genome.html" title="class in model">Genome</a> herbivoreGenome</pre>
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<pre>private static <a href="../model/Genome.html" title="class in model">Genome</a> carnivoreGenome</pre>
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<pre>private java.util.Random random</pre>
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<pre>public Genome()</pre>
<div class="block">The default constructor provides a standard genome.</div>
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<pre>public Genome(<a href="../model/Genome.html" title="class in model">Genome</a> parentGenome)</pre>
<div class="block">This constructor creates a new genome based on the parent genome passed
to it, mutating it at random.</div>
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<pre>public Genome(int mutationRate,
int speed,
int stamina,
int sight,
int metabolism,
int ageLimit,
int strength,
int reproductiveEnergy,
int maturityAge,
int gestation,
int reproductionRate)</pre>
<div class="block">This constructor creates a genome from the values passed to it.</div>
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<pre>public Genome(java.util.HashMap<java.lang.String,java.lang.Integer> genVars)</pre>
<div class="block">This constructor creates a genome from a HashMap.</div>
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<pre>private int mutation(int coefficient)</pre>
<div class="block">Returns a mutation factor depending on the specified mutation rate.</div>
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<dt><span class="paramLabel">Parameters:</span></dt>
<dd><code>coefficient</code> - Influences the size of the returned factor.</dd>
<dt><span class="returnLabel">Returns:</span></dt>
<dd>factor The wanted mutation factor.</dd>
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<pre>private void checkGenome()</pre>
<div class="block">Check to make sure that no "gene" has a value below zero</div>
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<pre>public java.util.HashMap<java.lang.String,java.lang.Integer> asHashMap()</pre>
<div class="block">Return all the "genes" of this genome in a single HashMap.</div>
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<dt><span class="returnLabel">Returns:</span></dt>
<dd>genomeInfo</dd>
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<pre>public int getMutationRate()</pre>
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<pre>public int getSpeed()</pre>
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<pre>public int getStamina()</pre>
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<pre>public int getSight()</pre>
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<pre>public int getMetabolism()</pre>
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<pre>public int getAgeLimit()</pre>
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<pre>public int getStrength()</pre>
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<pre>public int getReproductiveEnergy()</pre>
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<pre>public int getMaturityAge()</pre>
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<pre>public int getGestation()</pre>
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<pre>public int getReproductionRate()</pre>
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